10131
| Id | 10131 |
| Library | AH |
| Clone ID | AHB533 |
| Atlas ID | - |
| NBRP ID | - |
| dictyBase ID | - |
| Link to Contig | Contig-U16256-1 |
| Original site URL | <a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-B/AHB533Q.Seq.d/"><a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-B/AHB533Q.Seq.d/" target="_blank">http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-B/AHB533Q.Seq.d/</a></a> |
| Representative seq. ID | - |
| Representative DNA sequence |
>AHB533 (AHB533Q) /CSM/AH/AHB5-B/AHB533Q.Seq.d/ CAGAATGTGATAAAGGTGATGTTTGTATGGTTTATTCTTGTGATACTGAAAAAGGTTGTG TTGAAACTCCACGTGTTTGTCCATCCAAAGGTAAATGTCAAGTTGGTAAATGTGTTCCAG GTGTTGGTTGTAAATATGAACCACGTGTTTGTAAAGCTGATGCTTTCTGTTTAGTTGCTG AATGTGATGAAATAGTTGGTTGTATTCAATTTGAAAAGAAATGTGCTGCTGATAATGGTA GATGTCAAGCTGGTATTTGTAAGAATGCAACTGCAACTGAAGAAGGTACTTGTGAGTCTG TTGATTTCGATCCAAAACCATTCATTTGTAAAACTGCTGCTGTTGTTTCAGTTGGTGTTG CTGTTGGTGTTGCTGTTGGTGGTGCAATTGCACTTGGTGTCTTTATTTTTGCTGGTAAGA AAGGTTATGACTACTGGAAAGCAAGTCAAGGTGTTACAATGGCCACATCAAATGCCAATC CACTTTATGAAAGCAATCCATCAGGTGGTGAAAATCCAATTTATACTAXXXXXXXXXX |
| sequence update | 2002.10.25 |
| Translated Amino Acid sequence |
ECDKGDVCMVYSCDTEKGCVETPRVCPSKGKCQVGKCVPGVGCKYEPRVCKADAFCLVAE CDEIVGCIQFEKKCAADNGRCQAGICKNATATEEGTCESVDFDPKPFICKTAAVVSVGVA VGVAVGGAIALGVFIFAGKKGYDYWKASQGVTMATSNANPLYESNPSGGENPIYT--- |
| Translated Amino Acid sequence (All Frames) |
Frame A: qnvikvmfvwfilvilkkvvlklhvfvhpkvnvklvnvfqvlvvnmnhvfvklmlsv*ll nvmk*lvvfnlkrnvllimvdvklvfvrmqlqlkkvlvsllisiqnhsfvkllllfqlvl llvlllvvqlhlvslfllvrkvmttgkqvkvlqwphqmpihfmkaihqvvkiqfi--- Frame B: rm**r*clyglfl*y*krlc*nstclsiqr*mssw*mcsrcwl*i*ttcl*s*cflfsc* m**nswlysi*kemcc**w*msswyl*ecncn*rryl*vc*frsktihl*nccccfswcc cwcccwwcnctwclyfcw*erl*llesksrcynghikcqstl*kqsirw*ksnly--- Frame C: ECDKGDVCMVYSCDTEKGCVETPRVCPSKGKCQVGKCVPGVGCKYEPRVCKADAFCLVAE CDEIVGCIQFEKKCAADNGRCQAGICKNATATEEGTCESVDFDPKPFICKTAAVVSVGVA VGVAVGGAIALGVFIFAGKKGYDYWKASQGVTMATSNANPLYESNPSGGENPIYT--- |
| Homology vs CSM-cDNA |
Score E Sequences producing significant alignments: (bits) Value SSK891 (SSK891Q) /CSM/SS/SSK8-D/SSK891Q.Seq.d/ 1047 0.0 SLE370 (SLE370Q) /CSM/SL/SLE3-C/SLE370Q.Seq.d/ 1047 0.0 SLE336 (SLE336Q) /CSM/SL/SLE3-B/SLE336Q.Seq.d/ 1047 0.0 CHP226 (CHP226Q) /CSM/CH/CHP2-B/CHP226Q.Seq.d/ 1047 0.0 AHM282 (AHM282Q) /CSM/AH/AHM2-D/AHM282Q.Seq.d/ 1047 0.0 AHL357 (AHL357Q) /CSM/AH/AHL3-C/AHL357Q.Seq.d/ 1047 0.0 AHK601 (AHK601Q) /CSM/AH/AHK6-A/AHK601Q.Seq.d/ 1047 0.0 AHI579 (AHI579Q) /CSM/AH/AHI5-D/AHI579Q.Seq.d/ 1047 0.0 AHH651 (AHH651Q) /CSM/AH/AHH6-C/AHH651Q.Seq.d/ 1047 0.0 AHH361 (AHH361Q) /CSM/AH/AHH3-C/AHH361Q.Seq.d/ 1047 0.0 |
| own update | 2004.12.25 |
| Homology vs DNA |
Score E Sequences producing significant alignments: (bits) Value N G65023|G65023.1 DH0304 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site. 563 e-157 1 U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 52 7e-21 5 AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 52 9e-07 2 BX842624|BX842624.1 Neurospora crassa DNA linkage group I BAC clone B10D6. 64 2e-06 3 AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 54 2e-06 6 AC007814|AC007814.6 Drosophila melanogaster, chromosome 3R, region 91D-91E, BAC clone BACR44N12, complete sequence. 62 9e-06 1 AC007891|AC007891.8 Drosophila melanogaster, chromosome 3R, region 91E-91E, BAC clone BACR07D13, complete sequence. 62 9e-06 1 CQ613400|CQ613400.1 Sequence 41158 from Patent WO0171042. 62 9e-06 1 AC017841|AC017841.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 62 9e-06 1 CQ613401|CQ613401.1 Sequence 41159 from Patent WO0171042. 62 9e-06 1 |
| dna update | 2004. 2.26 |
| Homology vs Protein |
Score E Sequences producing significant alignments: (bits) Value (Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 197 1e-49 (Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 197 1e-49 (Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 177 2e-43 (Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 172 5e-42 (Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 170 2e-41 (Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 121 1e-26 (Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 115 5e-25 S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 64 3e-09 (P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 60 3e-08 A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 60 3e-08 |
| protein update | 2009. 4.28 |
| PSORT |
psg: 0.75 gvh: 0.45 alm: 0.21 top: 0.73 tms: 0.07 mit: 0.04 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 44.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for AHB533 is nuc |
| 5' end seq. ID | AHB533F |
| 5' end seq. |
>AHB533F.Seq CAGAATGTGATAAAGGTGATGTTTGTATGGTTTATTCTTGTGATACTGAAAAAGGTTGTG TTGAAACTCCACGTGTTTGTCCATCCAAAGGTAAATGTCAAGTTGGTAAATGTGTTCCAG GTGTTGGTTGTAAATATGAACCACGTGTTTGTAAAGCTGATGCTTTCTGTTTAGTTGCTG AATGTGATGAAATAGTTGGTTGTATTCAATTTGAAAAGAAATGTGCTGCTGATAATGGTA GATGTCAAGCTGGTATTTGTAAGAATGCAACTGCAACTGAAGAAGGTACTTGTGAGTCTG TTGATTTCGATCCAAAACCATTCATTTGTAAAACTGCTGCTGTTGTTTCAGTTGGTGTTG CTGTTGGTGTTGCTGTTGGTGGTGCAATTGCACTTGGTGTCTTTATTTTTGCTGGTAAGA AAGGTTATGACTACTGGAAAGCAAGTCAAGGTGTTACAATGGCCACATCAAATGCCAATC CACTTTATGAAAGCAATCCATCAGGTGGTGAAAATCCAATTTATACTANNNNNNNNNN |
| Length of 5' end seq. | 538 |
| 3' end seq. ID | - |
| 3' end seq. | - |
| Length of 3' end seq. | - |
| Connected seq. ID | - |
| Connected seq. | - |
| Length of connected seq. | - |
| Full length Seq ID | - |
| Full length Seq. | - |
| Length of full length seq. | - |