10143
| Id | 10143 |
| Library | AH |
| Clone ID | AHB550 |
| Atlas ID | - |
| NBRP ID | - |
| dictyBase ID | - |
| Link to Contig | Contig-U16403-1 |
| Original site URL | <a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB550Q.Seq.d/"><a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB550Q.Seq.d/" target="_blank">http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB550Q.Seq.d/</a></a> |
| Representative seq. ID | AHB550P |
| Representative DNA sequence |
>AHB550 (AHB550Q) /CSM/AH/AHB5-C/AHB550Q.Seq.d/ CCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTNTGA ANAATCAAAAANTAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACA AAAACAAACATCAAATCAATCANAANATCCTGCTNCTCAATTATCTTCATTGAAATTTGA AAGNGATAAANAAAAAXXXXXXXXXXGTTANGATTTTGGTTNTTACTTGGATATTCAAAA TTCAATTGATCAAGATTTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTTC AGTTTGNTGTGGTAAATTCAGNTCAGATANAACCNTTAAANAGTATGNTCAACAAATTTG GGGTATTGAANAANGGAANAGACCAGGNCCAGTTCCAGTTTCAAANGAANAAGNTNGTTN TTTATTAGTTCCNCCNCCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAAG ATTATCNCCTTTAACTTTTGTTAAACAAACTTNTGNTTNTCCATTATCTGTTATCTCTGG NGGTGATAAAACCAACAACNCTTTAAAACCAAAACNAACTACAAAAGGTTTTAATATTGG NGGTCAACCAGGTAATCCNACNAATTAATTAAATAATAATAATAAAAAAAGAAAAAAATA AAAAAAAAATAAAAAAAAAATATTTCAAACAAAAGTAATAAAATTAAATCAATAATTAAA AAAATAAATAAATAAAAGTA |
| sequence update | 2002.10.25 |
| Translated Amino Acid sequence |
PPRSNSNPKLVAKHQQQLXEXSKXKRNQEQQNQQPQQQQQKQTSNQSXXPAXQLSSLKFE XDKXK--- ---XDFGXYLDIQNSIDQDFKXXXKWXKKSIMXSVXCGKFXSDXTXKXYXQQIWGIEXXX RPGPVPVSXEXXXXLLVPPPFGSPNDINXISIERLSPLTFVKQTXXXPLSVISGGDKTNN XLKPKXTTKGFNIGGQPGNPTN*lnnnnkkrkk*kknkkkifqtkviklnq*lkk*inks |
| Translated Amino Acid sequence (All Frames) |
Frame A: ptkikfqpkvgcktstatx*xikx*kksrttksttsttttktniksixxscxsiifiei* kx*xk--- ---vxilvxtwifkiqlikisxixxngxknqlwxqfxvvnsxqixplxsmxnkfgvlxxg xdqxqfqfqxxkxvxy*fxxhlvxqmismxfqlkdyxl*lllnklxxxhyllslxvikpt tl*nqnxlqkvlilxvnqvixxin*iiiikkeknkkkikkkyfkqk**n*inn*knk*ik v Frame B: PPRSNSNPKLVAKHQQQLXEXSKXKRNQEQQNQQPQQQQQKQTSNQSXXPAXQLSSLKFE XDKXK--- ---lxfwxllgyskfn*srfqxxx*mg*kinygfslxw*iqxrxnx*xvxstnlgy*xxe xtrxsssfkxxxxxfissxxiwfxk*yqxyfn*kiixfnfc*tnxxxsiicylwx**nqq xfktktnykrf*ywxstr*sxxlik****kkkkikkk*kknisnksnkiksiikkink*k Frame C: hqdqiptqswlqninsnfxxnqkxkeiknnkinnlnnnnknkhqinxxilllnylh*nlk xixk--- ---XDFGXYLDIQNSIDQDFKXXXKWXKKSIMXSVXCGKFXSDXTXKXYXQQIWGIEXXX RPGPVPVSXEXXXXLLVPPPFGSPNDINXISIERLSPLTFVKQTXXXPLSVISGGDKTNN XLKPKXTTKGFNIGGQPGNPTN*lnnnnkkrkk*kknkkkifqtkviklnq*lkk*inks |
| Homology vs CSM-cDNA |
Score E Sequences producing significant alignments: (bits) Value AHB550 (AHB550Q) /CSM/AH/AHB5-C/AHB550Q.Seq.d/ 617 e-175 AHQ446 (AHQ446Q) /CSM/AH/AHQ4-B/AHQ446Q.Seq.d/ 611 e-174 AHI465 (AHI465Q) /CSM/AH/AHI4-C/AHI465Q.Seq.d/ 605 e-172 AHB459 (AHB459Q) /CSM/AH/AHB4-C/AHB459Q.Seq.d/ 605 e-172 SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/ 601 e-171 SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/ 601 e-171 SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/ 601 e-171 CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/ 601 e-171 AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/ 601 e-171 AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/ 601 e-171 |
| own update | 2004.12.25 |
| Homology vs DNA |
Score E Sequences producing significant alignments: (bits) Value N M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 321 0.0 5 AC101183|AC101183.1 Mus musculus clone RP23-176D22, LOW-PASS SEQUENCE SAMPLING. 40 0.15 4 AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 0.29 12 AC133521|AC133521.1 Mus musculus chromosome UNK clone RP23-189F22, WORKING DRAFT SEQUENCE, 11 unordered pieces. 42 0.31 4 AC122838|AC122838.3 Mus musculus chromosome 3 clone RP23-191E1, complete sequence. 42 0.37 3 BX129617|BX129617.1 Danio rerio genomic clone DKEY-286G22, genomic survey sequence. 40 0.41 2 AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence. 42 0.46 8 AC132592|AC132592.1 Mus musculus chromosome UNK clone RP24-303I6, WORKING DRAFT SEQUENCE, 12 unordered pieces. 42 0.57 3 AC121266|AC121266.3 Mus musculus clone RP24-320G2, WORKING DRAFT SEQUENCE, 9 unordered pieces. 42 0.65 2 AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 0.99 10 |
| dna update | 2004. 2.27 |
| Homology vs Protein |
Score E Sequences producing significant alignments: (bits) Value EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho... 59 1e-07 CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 56 1e-06 AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c... 54 5e-06 (Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 54 5e-06 AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos... 54 5e-06 CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 54 5e-06 CP000382_94(CP000382|pid:none) Clostridium novyi NT, complete ge... 54 5e-06 EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou... 54 5e-06 AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos... 53 1e-05 CP000478_1455(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 52 1e-05 |
| protein update | 2009. 4.28 |
| PSORT |
psg: 0.58 gvh: 0.26 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: nuclear 28.0 %: cytoplasmic 24.0 %: mitochondrial 8.0 %: cytoskeletal 4.0 %: extracellular, including cell wall >> prediction for AHB550 is nuc |
| 5' end seq. ID | AHB550F |
| 5' end seq. |
>AHB550F.Seq CCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTNTGA ANAATCAAAAANTAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACA AAAACAAACATCAAATCAATCANAANATCCTGCTNCTCAATTATCTTCATTGAAATTTGA AAGNGATAAANAAAAANNNNNNNNNN |
| Length of 5' end seq. | 206 |
| 3' end seq. ID | AHB550Z |
| 3' end seq. |
>AHB550Z.Seq NNNNNNNNNNGTTANGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGATCAAGAT TTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTTCAGTTTGNTGTGGTAAA TTCAGNTCAGATANAACCNTTAAANAGTATGNTCAACAAATTTGGGGTATTGAANAANGG AANAGACCAGGNCCAGTTCCAGTTTCAAANGAANAAGNTNGTTNTTTATTAGTTCCNCCN CCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAAGATTATCNCCTTTAACT TTTGTTAAACAAACTTNTGNTTNTCCATTATCTGTTATCTCTGGNGGTGATAAAACCAAC AACNCTTTAAAACCAAAACNAACTACAAAAGGTTTTAATATTGGNGGTCAACCAGGTAAT CCNACNAATTAATTAAATAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAATAAAAAA AAAATATTTCAAACAAAAGTAATAAAATTAAATCAATAATTAAAAAAATAAATAAATAAA AGTA |
| Length of 3' end seq. | 544 |
| Connected seq. ID | AHB550P |
| Connected seq. |
>AHB550P.Seq CCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTNTGA ANAATCAAAAANTAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACA AAAACAAACATCAAATCAATCANAANATCCTGCTNCTCAATTATCTTCATTGAAATTTGA AAGNGATAAANAAAAA----------GTTANGATTTTGGTTNTTACTTGGATATTCAAAA TTCAATTGATCAAGATTTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTTC AGTTTGNTGTGGTAAATTCAGNTCAGATANAACCNTTAAANAGTATGNTCAACAAATTTG GGGTATTGAANAANGGAANAGACCAGGNCCAGTTCCAGTTTCAAANGAANAAGNTNGTTN TTTATTAGTTCCNCCNCCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAAG ATTATCNCCTTTAACTTTTGTTAAACAAACTTNTGNTTNTCCATTATCTGTTATCTCTGG NGGTGATAAAACCAACAACNCTTTAAAACCAAAACNAACTACAAAAGGTTTTAATATTGG NGGTCAACCAGGTAATCCNACNAATTAATTAAATAATAATAATAAAAAAAGAAAAAAATA AAAAAAAAATAAAAAAAAAATATTTCAAACAAAAGTAATAAAATTAAATCAATAATTAAA AAAATAAATAAATAAAAGTA |
| Length of connected seq. | 730 |
| Full length Seq ID | - |
| Full length Seq. | - |
| Length of full length seq. | - |