10149
| Id | 10149 |
| Library | AH |
| Clone ID | AHB557 |
| Atlas ID | - |
| NBRP ID | - |
| dictyBase ID | - |
| Link to Contig | Contig-U16256-1 |
| Original site URL | <a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB557Q.Seq.d/"><a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB557Q.Seq.d/" target="_blank">http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB5-C/AHB557Q.Seq.d/</a></a> |
| Representative seq. ID | - |
| Representative DNA sequence |
>AHB557 (AHB557Q) /CSM/AH/AHB5-C/AHB557Q.Seq.d/ ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTN ACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATTTTAAATAATAAAAATAATAAT TAATAATAATAAAAATAATAATAACAAATTGAAATTAATAAATCACACCAAAAAAACGTA CACACACAAAAATAATAATAAAATGAAAAAGACTTTCATATTTTTATACTGTGTGGTTCT TTTTATTTCTACCACTCTAGCAGTTGAAATGAAAAAAACTCAAGATTTTAATTTAAGAAT TTTCGATCAACATCCAAAATATAATAACAATTTTGAACCTGAAAATGGTGTTTTAACAGT AAATCTTGTAAAATCAATTCTAAATGAAACCACTGGTATTCCAGAGTTAACCACAATGTC AAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACTT TTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAGA TATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAAXXXXXXXXX X |
| sequence update | 2002.10.25 |
| Translated Amino Acid sequence |
*tvntstpksmktvancdnxlelqptgivemlnahddigpfglgvilg*ewsf*IIKIII NNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMKKTQDFNLRI FDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRIYSPELFKYF FADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYD--- |
| Translated Amino Acid sequence (All Frames) |
Frame A: ingeylds*idedrsklr*xt*iaaywds*nvert**hrsfrircytwvrvvilnnknnn ****k***qieinkshqknvhtqk***nekdfhifilcgsfyfyhsss*neknsrf*fkn frstski**qf*t*kwcfnsksckinsk*nhwysrvnhnvksyncq*trsylftrii*il fr**f*csr*kq*w*klsiryysynefr**iklfl*--- Frame B: *tvntstpksmktvancdnxlelqptgivemlnahddigpfglgvilg*ewsf*IIKIII NNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMKKTQDFNLRI FDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRIYSPELFKYF FADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYD--- Frame C: kr*iprllnr*rp*qtaiixlncsllg*lkc*thmmtsvlsd*vlylgesghfk**k**l iiikiiitn*n**itpkkrthtkiiik*krlsyfytvwfflflpl*qlk*kklkili*ef siniqniitilnlkmvf*q*il*nqf*mkplvfqs*pqcqilqlsinkvvfihqnylntf sliilmlqietivvkiih*illlq*i*minqiifmi--- |
| Homology vs CSM-cDNA |
Score E Sequences producing significant alignments: (bits) Value SHL390 (SHL390Q) /CSM/SH/SHL3-D/SHL390Q.Seq.d/ 714 0.0 SHJ448 (SHJ448Q) /CSM/SH/SHJ4-B/SHJ448Q.Seq.d/ 714 0.0 SHJ195 (SHJ195Q) /CSM/SH/SHJ1-D/SHJ195Q.Seq.d/ 714 0.0 SHI807 (SHI807Q) /CSM/SH/SHI8-A/SHI807Q.Seq.d/ 714 0.0 SHH122 (SHH122Q) /CSM/SH/SHH1-A/SHH122Q.Seq.d/ 714 0.0 SHG866 (SHG866Q) /CSM/SH/SHG8-C/SHG866Q.Seq.d/ 714 0.0 SHG676 (SHG676Q) /CSM/SH/SHG6-D/SHG676Q.Seq.d/ 714 0.0 SHG208 (SHG208Q) /CSM/SH/SHG2-A/SHG208Q.Seq.d/ 714 0.0 SHF415 (SHF415Q) /CSM/SH/SHF4-A/SHF415Q.Seq.d/ 714 0.0 SHF223 (SHF223Q) /CSM/SH/SHF2-A/SHF223Q.Seq.d/ 714 0.0 |
| own update | 2002. 9.18 |
| Homology vs DNA |
Score E Sequences producing significant alignments: (bits) Value N X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 303 2e-78 1 AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 303 2e-78 1 V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA. 287 1e-73 1 AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 260 2e-65 1 AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 260 2e-65 1 AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 258 9e-65 1 AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 254 1e-63 1 AY330646|AY330646.1 Dictyostelium clavatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 252 5e-63 1 AF351197|AF351197.1 Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 252 5e-63 1 AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 252 5e-63 1 |
| dna update | 2004. 2.27 |
| Homology vs Protein |
Score E Sequences producing significant alignments: (bits) Value (Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 105 1e-21 (Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 88 2e-16 (Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 81 3e-14 (Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 73 8e-12 (Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 70 4e-11 (Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 69 1e-10 (Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 65 1e-09 (Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 46 0.001 (Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 40 0.044 CP000302_197(CP000302|pid:none) Shewanella denitrificans OS217, ... 38 0.29 |
| protein update | 2008.11.29 |
| PSORT |
psg: 0.43 gvh: 0.70 alm: 0.21 top: 0.10 tms: 0.07 mit: 0.42 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.13 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 20.0 %: cytoplasmic 20.0 %: mitochondrial 16.0 %: Golgi 16.0 %: nuclear 16.0 %: endoplasmic reticulum 4.0 %: extracellular, including cell wall 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for AHB557 is cyt |
| 5' end seq. ID | AHB557F |
| 5' end seq. |
>AHB557F.Seq ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTN ACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATTTTAAATAATAAAAATAATAAT TAATAATAATAAAAATAATAATAACAAATTGAAATTAATAAATCACACCAAAAAAACGTA CACACACAAAAATAATAATAAAATGAAAAAGACTTTCATATTTTTATACTGTGTGGTTCT TTTTATTTCTACCACTCTAGCAGTTGAAATGAAAAAAACTCAAGATTTTAATTTAAGAAT TTTCGATCAACATCCAAAATATAATAACAATTTTGAACCTGAAAATGGTGTTTTAACAGT AAATCTTGTAAAATCAATTCTAAATGAAACCACTGGTATTCCAGAGTTAACCACAATGTC AAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACTT TTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAGA TATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAANNNNNNNNN N |
| Length of 5' end seq. | 661 |
| 3' end seq. ID | - |
| 3' end seq. | - |
| Length of 3' end seq. | - |
| Connected seq. ID | - |
| Connected seq. | - |
| Length of connected seq. | - |
| Full length Seq ID | - |
| Full length Seq. | - |
| Length of full length seq. | - |