13
Id 13
Library AF
Clone ID AFA126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12019-1
Original site URL <a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA126Q.Seq.d/"><a href="http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA126Q.Seq.d/" target="_blank">http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA126Q.Seq.d/</a></a>
Representative seq. ID AFA126Z
Representative DNA sequence >AFA126 (AFA126Q) /CSM/AF/AFA1-B/AFA126Q.Seq.d/
XXXXXXXXXXTAAACAATCAACATTTAGATGTATTGAATGTGGTTTCGATTTCATTGAAA
TTCATTGTGCTCATGGTTATTTATTAAACCAATTTCTATCACCAACTTCAAATAAAAGAA
CTGATGAGTATGGTGGTTCTTTTGAAAATAGAATTAGAATAGTATTAGAAATTATTGAAG
CTGTTCGTTCAGTTTGGTCAAGAGATAAAGCTTTAGGTGTTCGTTTATCATGCGTTGAAT
GGACTGATGATGGTTGGGGAATGGAAGATACTATTAAATTTACAAAAGTTTTAAAAGATT
TAGGTACAATTGATTTAATTGATTGTTCAAGTGGTGGTAATAATCATTTACAAAAAATTA
AAGTTTGTCCAATGTATCAAGTTCCATTTGCAGATTCTGTAAAGAAAACATTAAATGAAA
ATAGTGGTGGTGGTGTTGGTGATGAAAATAAAATTAAAGTTGCGACTGTTGGTTTAATTA
ATCATGGTGATGAAATTGAATCAATTTTACAAGAAAATCGTGCTGATATCGTTATGTGTG
CTAGAAGTTTTTTACGTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence ---KQSTFRCIECGFDFIEIHCAHGYLLNQFLSPTSNKRTDEYGGSFENRIRIVLEIIEA
VRSVWSRDKALGVRLSCVEWTDDGWGMEDTIKFTKVLKDLGTIDLIDCSSGGNNHLQKIK
VCPMYQVPFADSVKKTLNENSGGGVGDENKIKVATVGLINHGDEIESILQENRADIVMCA
RSFLR
Translated Amino Acid sequence (All Frames) Frame A:
---KQSTFRCIECGFDFIEIHCAHGYLLNQFLSPTSNKRTDEYGGSFENRIRIVLEIIEA
VRSVWSRDKALGVRLSCVEWTDDGWGMEDTIKFTKVLKDLGTIDLIDCSSGGNNHLQKIK
VCPMYQVPFADSVKKTLNENSGGGVGDENKIKVATVGLINHGDEIESILQENRADIVMCA
RSFLR


Frame B:
---nnqhldvlnvvsislkfivlmviy*tnfyhqlqikelmsmvvllkiele*y*kllkl
fvqfgqeikl*vfvyhalnglmmvgewkillnlqkf*ki*vqli*livqvvviiiykklk
fvqcikfhlqil*rkh*mkivvvvlvmkiklklrllv*limvmklnqfykkivlislcvl
evfyv


Frame C:
---tini*my*mwfrfh*nslcswlfikpisitnfk*kn**vwwff*k*n*nsirny*sc
sfslvkr*sfrcsfimr*md**wlgngryy*iyksfkrfryn*fn*lfkww**sftkn*s
lsnvsssicrfckenik*k*wwwcw**k*n*scdcwfn*sw**n*inftrksc*yryvc*
kfft*
Homology vs CSM-cDNA
Score E
Sequences producing significant alignments: (bits) Value

AFA126 (AFA126Q) /CSM/AF/AFA1-B/AFA126Q.Seq.d/ 1088 0.0
CFG462 (CFG462Q) /CSM/CF/CFG4-C/CFG462Q.Seq.d/ 1080 0.0
CFC138 (CFC138Q) /CSM/CF/CFC1-B/CFC138Q.Seq.d/ 1080 0.0
AFO707 (AFO707Q) /CSM/AF/AFO7-A/AFO707Q.Seq.d/ 1080 0.0
AFO370 (AFO370Q) /CSM/AF/AFO3-C/AFO370Q.Seq.d/ 1080 0.0
AFE844 (AFE844Q) /CSM/AF/AFE8-B/AFE844Q.Seq.d/ 1080 0.0
AFJ159 (AFJ159Q) /CSM/AF/AFJ1-C/AFJ159Q.Seq.d/ 1078 0.0
CFC790 (CFC790Q) /CSM/CF/CFC7-D/CFC790Q.Seq.d/ 1068 0.0
AFB643 (AFB643Q) /CSM/AF/AFB6-B/AFB643Q.Seq.d/ 1066 0.0
AFO487 (AFO487Q) /CSM/AF/AFO4-D/AFO487Q.Seq.d/ 1065 0.0
own update 2004.12.25
Homology vs DNA
Score E
Sequences producing significant alignments: (bits) Value N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 42 1e-11 9
AZ931849|AZ931849.1 474.dhz90h07.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz90h07.s1, DNA sequence. 56 5e-04 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 5e-04 11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 0.001 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.004 11
AZ692750|AZ692750.1 ENTKN19TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 0.007 1
AZ528469|AZ528469.1 ENTCE72TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 0.007 1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 0.013 10
AC122728|AC122728.16 Medicago truncatula clone mth2-22l4, WORKING DRAFT SEQUENCE, 6 unordered pieces. 46 0.027 5
CD477634|CD477634.1 eca01-27ms1-a05 Eca01 Eschscholzia californica cDNA clone eca01-27ms1-a05 5', mRNA sequence. 50 0.029 1
dna update 2003. 7.22
Homology vs Protein
Score E
Sequences producing significant alignments: (bits) Value

AC117072_14(AC117072|pid:none) Dictyostelium discoideum chromoso... 184 2e-45
CP000473_670(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 169 3e-41
CP000075_1298(CP000075|pid:none) Pseudomonas syringae pv. syring... 168 1e-40
CP000058_1315(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 167 2e-40
CP000926_1078(CP000926|pid:none) Pseudomonas putida GB-1, comple... 161 1e-38
CP000712_4190(CP000712|pid:none) Pseudomonas putida F1, complete... 160 3e-38
CP000949_4113(CP000949|pid:none) Pseudomonas putida W619, comple... 159 3e-38
CP000359_959(CP000359|pid:none) Deinococcus geothermalis DSM 113... 159 3e-38
CP000094_1035(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 159 3e-38
CP000304_2699(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 159 3e-38
protein update 2009. 3.25
PSORT
psg: 0.75 gvh: 0.41 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for AFA126 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFA126Z
3' end seq. >AFA126Z.Seq
----------TAAACAATCAACATTTAGATGTATTGAATGTGGTTTCGATTTCATTGAAA
TTCATTGTGCTCATGGTTATTTATTAAACCAATTTCTATCACCAACTTCAAATAAAAGAA
CTGATGAGTATGGTGGTTCTTTTGAAAATAGAATTAGAATAGTATTAGAAATTATTGAAG
CTGTTCGTTCAGTTTGGTCAAGAGATAAAGCTTTAGGTGTTCGTTTATCATGCGTTGAAT
GGACTGATGATGGTTGGGGAATGGAAGATACTATTAAATTTACAAAAGTTTTAAAAGATT
TAGGTACAATTGATTTAATTGATTGTTCAAGTGGTGGTAATAATCATTTACAAAAAATTA
AAGTTTGTCCAATGTATCAAGTTCCATTTGCAGATTCTGTAAAGAAAACATTAAATGAAA
ATAGTGGTGGTGGTGTTGGTGATGAAAATAAAATTAAAGTTGCGACTGTTGGTTTAATTA
ATCATGGTGATGAAATTGAATCAATTTTACAAGAAAATCGTGCTGATATCGTTATGTGTG
CTAGAAGTTTTTTACGTAA
Length of 3' end seq. 549
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -